I was looking at running my longitudinal dataset through the BIDS app, however it throws an error for no fmap directory. I presume that this is because it is looking in sub-xxx/ for fmap, rather sub-xxx/ses-xx/. Is there a way to get it to look in the right spot?
I’ve not yet made the necessary changes to the script in order for it to properly identify and process multiple sessions within each subject.
The easiest way to get around it is to simply turn each session into its own subject within the BIDS structure.