Display automation - can overlay intensity scaling and thresholds be set from the mrview command line?

1

Hi everyone,

I’m wondering if there is an option for mrview that will let me set the intensity windowing and intensity thresholds for an overlay? -intensity_range only applies to images at the moment (from what I can tell).

If it would be possible to have an option of the form

-overlay.intensity min,max

…then I would be extremely grateful. Especially if it could be made to apply only to the “current” overlay, if loading multiple overlays. I would love to be able to:

mrview -load image1.mif -overlay.load image1_overlay1.mif -overlay.colourmap 4 -overlay.intensity 0,27000 -overlay.load image1_overlay2.mif -overlay.colourmap 4 -overlay.intensity 0,8000 -overlay.load… … …

On a more religious note, thank you for using the correct spelling of colour. As an Aussie it makes me feel much better.

Cheers,

Warwick

2

Oops - I forgot one part of my question.

As well as an ability to set the intensity scaling of an overlay, if there were additionally an option similar to:

-overlay.threshold lower,upper

…that would be extremely helpful. Thank you again, I know that you’re giving us (the community) so much of your time already.

Cheers,

Warwick

3

Hi Warwick,

I’ve added thos requests to the existing GitHub issue; there’s probably a lot of GUI functionalities that don’t yet have corresponding command-line options, it’s just a matter of somebody finding the time to implement them (which isn’t actually overly difficult, if anybody wants to take it on :stuck_out_tongue: )

On a more religious note, thank you for using the correct spelling of colour. As an Aussie it makes me feel much better.

:rofl: :+1:

Rob