I like to create a whole brain mask for dwibiascorrect, dwi2tensor, and dwi2fod
When I use dwi2mask, it excludes the posterior Corpus Callosum.
I played with maskfilter. (dilate, median))
For – dilate -npass 5, It include the Corpus Callosum but it also include a lot of non-brain (attach- mask and tensor)
I will much appreciate your help!