I think I am missing qt. How would I install it with msys2?
Could I have also used the Linux subsystem on windows 10?
I installed msys2 on windows 10 as the instructions suggest.
pacman -S git python pkg-config mingw-w64-x86_64-gcc mingw-w64-x86_64-eigen3 mingw-w64-x86_64-qt5 mingw-w64-x86_64-fftw
git clone https://github.com/MRtrix3/mrtrix3.git
I get the following error
ERROR: error compiling Eigen3 application!
MRtrix3 was unable to compile a test program involving Eigen3.
Set the EIGEN_CFLAGS environment variable to inform 'configure' of
the flags it must provide to the compiler in order to compile
programs that use Eigen3 functionality; this may include the path to
the Eigen3 include files, as well as any required flags.
$ export EIGEN_CFLAGS="-isystem /usr/include/eigen3"
(amend with the actual path to the Eigen3 include files on your system)