Graph theory measures


#1

Dear experts,

I have created connectomes with tck2connectome. Now, I don’t understand how to derive network measures. Could anyone please explain how to use connectomes that created with tck2connectomes to extract network measures using BCT.
Also, I have a question about results interpretation of connectomestats with NBS and NBSE.
Please help me to figure this out.
Thank you in advance.


#2

Hello,

You can use the bctpy package in Python or the BCT toolbox in MATLAB to derive graph theory measures on the connectome. The BCT websites lists some commonly used measures for brain connectivity, or you can check out their paper. I’ve personally done graph theory analysis using NetworkX in Python.

I’m also just discovering NBS/NBSE, so I can’t be much help there. Perhaps this post may help?

Rafi