I’m following the HCP connectome tutorial and I’ve some questions related with the parcellation step.
I have used the freesurfer’s parcellation running the
labelconvert command and it worked OK.
Now, I want to do the same but using the AAL’s LUT, my problem is that I don’t have the subject’s brain parcellated with AAL atlas, so how do you use this LUT? what is your input image in
labelconvert when your LUT is the aal.txt file? I only have a template of the AAL atlas and I tried with FreeSurfer but there is no command to change and use it.