I am trying to run tractography to find connections from a specific seed region and targets, and I have been using the MRtrix3 Connectome BIDS app for running my analysis. This involves using the seed_dynamic option to generate tracts throughout the whole brain.
How do I ensure that, using this option, it seeds from all voxels within a specific region and that it effectively captures those streamlines?
How would using the seed_image option, and specifying the mask to be used, change the produced results?
Thanks so much.