# A problem of dwifslpreproc **URL:** \ **Category:** Uncategorized\ **Tags:** installation, anaconda, fsl\ **Created:** [September 12, 2023, 8:27pm UTC](https://community.mrtrix.org/t/a-problem-of-dwifslpreproc/6959 "2023-09-12T20:27:34Z")\ **Posts on this page:** 1\ **Showing post:** 10
**Author:** ![math\_priyanka](https://community.mrtrix.org/user_avatar/community.mrtrix.org/math_priyanka/32/4998_2.png) [@math\_priyanka](https://community.mrtrix.org/u/math_priyanka)\ **Post date:** [September 15, 2023, 8:31pm UTC](https://community.mrtrix.org/t/a-problem-of-dwifslpreproc/6959/10 "2023-09-15T20:31:02Z")
Hello donald, One more request regarding this post… > [@Problem with SC in AAL parcellation](https://community.mrtrix.org/t/problem-with-sc-in-aal-parcellation/6490): > > I am trying to generate SC in AAL parcellation. I have used BATMAN pre-processing pipeline to generate ‘ubiased.nii.gz’ and ‘tracks\_20M.tck’ files. Then i used the following steps to get SC in AAL. flirt -in unbiased.nii.gz -ref mean\_b0.nii.gz -omat T12dwi\_affine.mat -interp nearestneighbour -dof 12 flirt -in unbiased.nii.gz -ref mean\_b0.nii.gz -applyxfm -init T12dwi\_affine.mat -out T12dwi.nii.gz 5ttgen fsl T12dwi.nii.gz 5tt\_foraal.mif -premasked -force flirt -in unbiased.nii.gz -… I understand that this issue has been discussed extensively, and I’ve been working diligently on it for quite some time, but I’m still facing some challenges with it. Please assist me. Thank you in advance for your help. Thank you Priyanka --- _[View the full topic](https://community.mrtrix.org/t/a-problem-of-dwifslpreproc/6959)._