The two issues are unrelated.
Issue #1:
This is the consequence of moving from Intel to Apple Silicon. For the time being you will have to use this workaround:
Issue #2:
This is the consequence from updating to Sonoma as also reported in shview: Secure coding is not enabled for restorable state! on macOS 14 · Issue #2740 · MRtrix3/mrtrix3 · GitHub. Interestingly, you get the warning also for mrview
, while for me it only shows up when running shview
. It is just a warning, so mrview should operate just fine. I suspect this will get fixed in the next update.