Hi Peter,
I’m not sure how much advice myself or anybody else can provide without more detail of exactly what you’re trying to achieve. Obviously you need to avoid divulging confidential information regarding novel aspects of the experiment you’re trying to perform, or the cohort you’re looking at, but hopefully you can still give us something to work off. E.g.:
- Do you want to use MNI space purely to report localisation?
- Are you using a parcellation defined in MNI space for e.g. a connectome analysis?
- Are you defining WM pathways of interest in MNI space, and want to assess per-subject quantitative image values based on that segmentation?
- Do you want to project per-subject results into MNI space in order to derive some form of group average?
Rob