Hi,I had used your methods to map Schaefer2018_200Parcels_7Networks_order.annot
from fsaverage
to individual volume space,but I found this final generated .mgz
file which still is aparc2009s parcellation
rather than Schaefer parcellation
.Meanwhile, I referred to methods provided by ThomasYeoLab’s “project_to_individual” program. I still can’t get the result I want.
Script in freesurfer 7.4.1
mris_ca_label -l $SUBJECTS_DIR/HC_sub001/label/lh.cortex.label \
HC_sub001 lh $SUBJECTS_DIR/HC_sub001/surf/lh.sphere.reg \
/mnt/sda1/fhao/DTI/test/lh.Schaefer2018_200Parcels_7Networks.gcs \
$SUBJECTS_DIR/HC_sub001/label/lh.Schaefer2018_200Parcels_7Networks_order.annot
mris_ca_label -l $SUBJECTS_DIR/HC_sub001/label/rh.cortex.label \
HC_sub001 rh $SUBJECTS_DIR/HC_sub001/surf/rh.sphere.reg \
/mnt/sda1/fhao/DTI/test/rh.Schaefer2018_200Parcels_7Networks.gcs \
$SUBJECTS_DIR/HC_sub001/label/rh.Schaefer2018_200Parcels_7Networks_order.annot
mri_aparc2aseg --s HC_sub001 --o Schaefer2018_200Parcels_7Networks_order.mgz --annot Schaefer2018_200Parcels_7Networks_order -annot-table Schaefer2018_200Parcels_7Networks_order_LUT.txt
ThomasYeoLab website https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/project_to_individual#1-schaefer2018-parcellation-in-individual-surface-space
Looking forward to your reply!