Dwifslpreproc fails with "unknown option -import_pe_table" (MRtrix3 3.0.7)

[namrauf]

Check this:

Preprocessing error

ya, it’s based on an older MRtrix version. like HannesAlmgren said, it is probably due to the renaming of certain commands. I switched to older version of python and the dwifslpreproc runs now. Afterwards when I try to generate a mask, the -ants option gives this error: antsRegistration: error while loading shared libraries: libITKIOBruker-5.3.so.1: cannot open shared object file: No such file or directory I tried to run it with fsl, and it works. But it’s not recommended to use fsl option. I…