For the next tag update I have dwipreproc
internally executing eddy_quad
if -eddyqc_text
or -eddyqc_all
is specified. It’s a little difficult to get a traceback, but you can see the final resulting code here. Maybe there might be some clue there as to how to get it working. I do seem to have documented in a comment there that QUAD does not work with Python2 (at least it didn’t when I wrote the code), but the exception you’re seeing doesn’t appear to be related to Python version.
It’s more likely to have something to do with fine names. I’m pretty sure that the DWI - “B1000_dc.nii.gz
” in your case - and the additional files that are written by eddy
and read by the eddy_quad
command - here exported to a directory “B1000_eddyQC/
” - need to have the same basename; i.e. differ in file extension only.