I think I am missing qt. How would I install it with msys2?
Could I have also used the Linux subsystem on windows 10?
I installed msys2 on windows 10 as the instructions suggest.
pacman -Syuu pacman -S git python pkg-config mingw-w64-x86_64-gcc mingw-w64-x86_64-eigen3 mingw-w64-x86_64-qt5 mingw-w64-x86_64-fftw
git clone https://github.com/MRtrix3/mrtrix3.git cd mrtrix3 ./configure
I get the following error
ERROR: error compiling Eigen3 application! MRtrix3 was unable to compile a test program involving Eigen3. Set the EIGEN_CFLAGS environment variable to inform 'configure' of the flags it must provide to the compiler in order to compile programs that use Eigen3 functionality; this may include the path to the Eigen3 include files, as well as any required flags. For example: $ export EIGEN_CFLAGS="-isystem /usr/include/eigen3" $./configure (amend with the actual path to the Eigen3 include files on your system)