Hello all,
I have run into error when using fixelfilter for log_fc directory, although the same command fixelfilter worked fine for fd, fdc and fc directories.
fixelfilter -matrix /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fixel_mask_peak0.18_matrix /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc smooth /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc_smooth -debug
fixelfilter: [DEBUG] No config file found at "/etc/mrtrix.conf"
fixelfilter: [DEBUG] No config file found at "/home/yehp/.mrtrix.conf"
fixelfilter: [ERROR] Could not interpret first argument "/data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc" as either a fixel data file, or a fixel directory
I also tried to use a single log_fc file, but it still failed.
Thank you.
Ping
I’m not sure, but this sounds to me like a simple case of ‘file not found’. Are you sure that the problematic argument actually corresponds to a folder in the expected fixel format? What does this command report:
ls /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc
Hi Donald,
Thanks for the reply.
ls /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc
NCNC0201_averageblipup_289_log_fc.mif NCNC3230_averageblipup_289_log_fc.mif NCNC3387_averageblipup_289_log_fc.mif NCNC3538_averageblipup_289_log_fc.mif
NCNC0202_averageblipup_289_log_fc.mif NCNC3231_averageblipup_289_log_fc.mif NCNC3388_averageblipup_289_log_fc.mif NCNC3539_averageblipup_289_log_fc.mif
NCNC1690_2_averageblipup_289_log_fc.mif NCNC3232_averageblipup_289_log_fc.mif NCNC3389_averageblipup_289_log_fc.mif NCNC3540_averageblipup_289_log_fc.mif
NCNC3097_averageblipup_289_log_fc.mif NCNC3233_averageblipup_289_log_fc.mif NCNC3391_averageblipup_289_log_fc.mif NCNC3541_averageblipup_289_log_fc.mif
NCNC3102_averageblipup_289_log_fc.mif NCNC3234_averageblipup_289_log_fc.mif NCNC3392_averageblipup_289_log_fc.mif NCNC3542_averageblipup_289_log_fc.mif
NCNC3103_averageblipup_289_log_fc.mif NCNC3235_averageblipup_289_log_fc.mif NCNC3393_averageblipup_289_log_fc.mif NCNC3543_averageblipup_289_log_fc.mif
NCNC3104_averageblipup_289_log_fc.mif NCNC3236_averageblipup_289_log_fc.mif NCNC3394_averageblipup_289_log_fc.mif NCNC3544_averageblipup_289_log_fc.mif
NCNC3105_averageblipup_289_log_fc.mif NCNC3237_averageblipup_289_log_fc.mif NCNC3395_averageblipup_289_log_fc.mif NCNC3545_averageblipup_289_log_fc.mif
NCNC3106_averageblipup_289_log_fc.mif NCNC3238_averageblipup_289_log_fc.mif NCNC3396_averageblipup_289_log_fc.mif NCNC3546_averageblipup_289_log_fc.mif
NCNC3107_averageblipup_289_log_fc.mif NCNC3239_averageblipup_289_log_fc.mif NCNC3397_averageblipup_289_log_fc.mif NCNC3547_averageblipup_289_log_fc.mif
NCNC3108_averageblipup_289_log_fc.mif NCNC3240_averageblipup_289_log_fc.mif NCNC3398_averageblipup_289_log_fc.mif NCNC3548_averageblipup_289_log_fc.mif
NCNC3109_averageblipup_289_log_fc.mif NCNC3241_averageblipup_289_log_fc.mif NCNC3399_averageblipup_289_log_fc.mif NCNC3550_averageblipup_289_log_fc.mif
NCNC3110_averageblipup_289_log_fc.mif NCNC3242_averageblipup_289_log_fc.mif NCNC3401_averageblipup_289_log_fc.mif NCNC3551_averageblipup_289_log_fc.mif
NCNC3111_averageblipup_289_log_fc.mif NCNC3243_averageblipup_289_log_fc.mif NCNC3402_averageblipup_289_log_fc.mif NCNC3552_averageblipup_289_log_fc.mif
NCNC3112_averageblipup_289_log_fc.mif NCNC3244_averageblipup_289_log_fc.mif NCNC3403_averageblipup_289_log_fc.mif NCNC3554_averageblipup_289_log_fc.mif
NCNC3113_averageblipup_289_log_fc.mif NCNC3245_averageblipup_289_log_fc.mif NCNC3404_averageblipup_289_log_fc.mif NCNC3556_averageblipup_289_log_fc.mif
NCNC3114_averageblipup_289_log_fc.mif NCNC3246_averageblipup_289_log_fc.mif NCNC3405_averageblipup_289_log_fc.mif NCNC3557_averageblipup_289_log_fc.mif
NCNC3115_averageblipup_289_log_fc.mif NCNC3247_averageblipup_289_log_fc.mif NCNC3406_averageblipup_289_log_fc.mif NCNC3558_averageblipup_289_log_fc.mif
NCNC3116_averageblipup_289_log_fc.mif NCNC3248_averageblipup_289_log_fc.mif NCNC3407_averageblipup_289_log_fc.mif NCNC3559_averageblipup_289_log_fc.mif
NCNC3117_averageblipup_289_log_fc.mif NCNC3249_averageblipup_289_log_fc.mif NCNC3408_averageblipup_289_log_fc.mif NCNC3560_averageblipup_289_log_fc.mif
NCNC3118_averageblipup_289_log_fc.mif NCNC3250_averageblipup_289_log_fc.mif NCNC3409_averageblipup_289_log_fc.mif NCNC3561_averageblipup_289_log_fc.mif
NCNC3119_averageblipup_289_log_fc.mif NCNC3251_averageblipup_289_log_fc.mif NCNC3418_averageblipup_289_log_fc.mif NCNC3562_averageblipup_289_log_fc.mif
NCNC3120_averageblipup_289_log_fc.mif NCNC3252_averageblipup_289_log_fc.mif NCNC3420_averageblipup_289_log_fc.mif NCNC3563_averageblipup_289_log_fc.mif
NCNC3121_averageblipup_289_log_fc.mif NCNC3253_averageblipup_289_log_fc.mif NCNC3421_averageblipup_289_log_fc.mif NCNC3564_averageblipup_289_log_fc.mif
NCNC3123_averageblipup_289_log_fc.mif NCNC3254_averageblipup_289_log_fc.mif NCNC3422_averageblipup_289_log_fc.mif NCNC3565_averageblipup_289_log_fc.mif
NCNC3124_averageblipup_289_log_fc.mif NCNC3255_averageblipup_289_log_fc.mif NCNC3423_averageblipup_289_log_fc.mif NCNC3566_averageblipup_289_log_fc.mif
NCNC3125_averageblipup_289_log_fc.mif NCNC3256_averageblipup_289_log_fc.mif NCNC3424_averageblipup_289_log_fc.mif NCNC3567_averageblipup_289_log_fc.mif
NCNC3126_averageblipup_289_log_fc.mif NCNC3257_averageblipup_289_log_fc.mif NCNC3425_averageblipup_289_log_fc.mif NCNC3568_averageblipup_289_log_fc.mif
NCNC3127_averageblipup_289_log_fc.mif NCNC3258_averageblipup_289_log_fc.mif NCNC3426_averageblipup_289_log_fc.mif NCNC3569_averageblipup_289_log_fc.mif
NCNC3128_averageblipup_289_log_fc.mif NCNC3259_averageblipup_289_log_fc.mif NCNC3427_averageblipup_289_log_fc.mif NCNC3570_averageblipup_289_log_fc.mif
NCNC3129_averageblipup_289_log_fc.mif NCNC3260_averageblipup_289_log_fc.mif NCNC3428_averageblipup_289_log_fc.mif NCNC3571_averageblipup_289_log_fc.mif
NCNC3130_averageblipup_289_log_fc.mif NCNC3261_averageblipup_289_log_fc.mif NCNC3430_averageblipup_289_log_fc.mif NCNC3572_averageblipup_289_log_fc.mif
NCNC3131_averageblipup_289_log_fc.mif NCNC3262_averageblipup_289_log_fc.mif NCNC3431_averageblipup_289_log_fc.mif NCNC3574_averageblipup_289_log_fc.mif
NCNC3132_averageblipup_289_log_fc.mif NCNC3263_averageblipup_289_log_fc.mif NCNC3432_averageblipup_289_log_fc.mif NCNC3575_averageblipup_289_log_fc.mif
NCNC3133_averageblipup_289_log_fc.mif NCNC3264_averageblipup_289_log_fc.mif NCNC3434_averageblipup_289_log_fc.mif NCNC3576_averageblipup_289_log_fc.mif
NCNC3134_averageblipup_289_log_fc.mif NCNC3265_averageblipup_289_log_fc.mif NCNC3435_averageblipup_289_log_fc.mif NCNC3577_averageblipup_289_log_fc.mif
NCNC3135_averageblipup_289_log_fc.mif NCNC3267_averageblipup_289_log_fc.mif NCNC3436_averageblipup_289_log_fc.mif NCNC5184_averageblipup_289_log_fc.mif
NCNC3136_averageblipup_289_log_fc.mif NCNC3268_averageblipup_289_log_fc.mif NCNC3437_averageblipup_289_log_fc.mif NCNC5185_averageblipup_289_log_fc.mif
NCNC3138_averageblipup_289_log_fc.mif NCNC3269_averageblipup_289_log_fc.mif NCNC3438_averageblipup_289_log_fc.mif NCNC5186_averageblipup_289_log_fc.mif
NCNC3141_averageblipup_289_log_fc.mif NCNC3270_averageblipup_289_log_fc.mif NCNC3439_averageblipup_289_log_fc.mif NCNC5187_averageblipup_289_log_fc.mif
NCNC3142_averageblipup_289_log_fc.mif NCNC3271_averageblipup_289_log_fc.mif NCNC3440_averageblipup_289_log_fc.mif NCNC5188_averageblipup_289_log_fc.mif
NCNC3143_averageblipup_289_log_fc.mif NCNC3272_averageblipup_289_log_fc.mif NCNC3441_averageblipup_289_log_fc.mif NCNC5189_averageblipup_289_log_fc.mif
NCNC3144_averageblipup_289_log_fc.mif NCNC3281_averageblipup_289_log_fc.mif NCNC3442_averageblipup_289_log_fc.mif NCNC5190_averageblipup_289_log_fc.mif
NCNC3145_averageblipup_289_log_fc.mif NCNC3284_averageblipup_289_log_fc.mif NCNC3445_averageblipup_289_log_fc.mif NCNC5191_averageblipup_289_log_fc.mif
NCNC3146_averageblipup_289_log_fc.mif NCNC3285_averageblipup_289_log_fc.mif NCNC3446_averageblipup_289_log_fc.mif NCNC5192_averageblipup_289_log_fc.mif
NCNC3147_averageblipup_289_log_fc.mif NCNC3286_averageblipup_289_log_fc.mif NCNC3447_averageblipup_289_log_fc.mif NCNC5193_averageblipup_289_log_fc.mif
NCNC3148_averageblipup_289_log_fc.mif NCNC3287_averageblipup_289_log_fc.mif NCNC3448_averageblipup_289_log_fc.mif NCNC5194_averageblipup_289_log_fc.mif
NCNC3149_averageblipup_289_log_fc.mif NCNC3288_averageblipup_289_log_fc.mif NCNC3449_averageblipup_289_log_fc.mif NCNC5195_averageblipup_289_log_fc.mif
NCNC3150_averageblipup_289_log_fc.mif NCNC3289_averageblipup_289_log_fc.mif NCNC3450_averageblipup_289_log_fc.mif NCNC5196_averageblipup_289_log_fc.mif
NCNC3151_averageblipup_289_log_fc.mif NCNC3290_averageblipup_289_log_fc.mif NCNC3451_averageblipup_289_log_fc.mif NCNC5197_averageblipup_289_log_fc.mif
NCNC3152_averageblipup_289_log_fc.mif NCNC3291_averageblipup_289_log_fc.mif NCNC3452_averageblipup_289_log_fc.mif NCNC5198_averageblipup_289_log_fc.mif
NCNC3153_averageblipup_289_log_fc.mif NCNC3292_averageblipup_289_log_fc.mif NCNC3455_averageblipup_289_log_fc.mif NCNC5199_averageblipup_289_log_fc.mif
NCNC3154_averageblipup_289_log_fc.mif NCNC3293_averageblipup_289_log_fc.mif NCNC3456_averageblipup_289_log_fc.mif NCNC5200_averageblipup_289_log_fc.mif
NCNC3155_averageblipup_289_log_fc.mif NCNC3294_averageblipup_289_log_fc.mif NCNC3457_averageblipup_289_log_fc.mif NCNC5201_averageblipup_289_log_fc.mif
NCNC3156_averageblipup_289_log_fc.mif NCNC3295_averageblipup_289_log_fc.mif NCNC3458_averageblipup_289_log_fc.mif NCNC5202_averageblipup_289_log_fc.mif
NCNC3157_averageblipup_289_log_fc.mif NCNC3296_averageblipup_289_log_fc.mif NCNC3459_averageblipup_289_log_fc.mif NCNC5203_averageblipup_289_log_fc.mif
NCNC3158_averageblipup_289_log_fc.mif NCNC3297_averageblipup_289_log_fc.mif NCNC3460_averageblipup_289_log_fc.mif NCNC5204_averageblipup_289_log_fc.mif
NCNC3160_averageblipup_289_log_fc.mif NCNC3298_averageblipup_289_log_fc.mif NCNC3461_averageblipup_289_log_fc.mif NCNC5205_averageblipup_289_log_fc.mif
NCNC3161_averageblipup_289_log_fc.mif NCNC3299_averageblipup_289_log_fc.mif NCNC3462_averageblipup_289_log_fc.mif NCNC5220_averageblipup_289_log_fc.mif
NCNC3162_averageblipup_289_log_fc.mif NCNC3300_averageblipup_289_log_fc.mif NCNC3463_averageblipup_289_log_fc.mif NCNC5224_averageblipup_289_log_fc.mif
NCNC3163_averageblipup_289_log_fc.mif NCNC3301_averageblipup_289_log_fc.mif NCNC3464_averageblipup_289_log_fc.mif NCNC5225_averageblipup_289_log_fc.mif
NCNC3164_averageblipup_289_log_fc.mif NCNC3302_averageblipup_289_log_fc.mif NCNC3465_averageblipup_289_log_fc.mif NCNC5226_averageblipup_289_log_fc.mif
NCNC3165_averageblipup_289_log_fc.mif NCNC3303_averageblipup_289_log_fc.mif NCNC3466_averageblipup_289_log_fc.mif NCNC5227_averageblipup_289_log_fc.mif
NCNC3166_averageblipup_289_log_fc.mif NCNC3305_averageblipup_289_log_fc.mif NCNC3467_averageblipup_289_log_fc.mif NCNC5228_averageblipup_289_log_fc.mif
NCNC3167_averageblipup_289_log_fc.mif NCNC3306_averageblipup_289_log_fc.mif NCNC3468_averageblipup_289_log_fc.mif NCNC5231_averageblipup_289_log_fc.mif
NCNC3168_averageblipup_289_log_fc.mif NCNC3307_averageblipup_289_log_fc.mif NCNC3469_averageblipup_289_log_fc.mif NCNC5232_averageblipup_289_log_fc.mif
NCNC3169_averageblipup_289_log_fc.mif NCNC3308_averageblipup_289_log_fc.mif NCNC3472_averageblipup_289_log_fc.mif NCNC5233_averageblipup_289_log_fc.mif
NCNC3170_averageblipup_289_log_fc.mif NCNC3309_averageblipup_289_log_fc.mif NCNC3473_averageblipup_289_log_fc.mif NCNC5234_averageblipup_289_log_fc.mif
NCNC3171_averageblipup_289_log_fc.mif NCNC3310_averageblipup_289_log_fc.mif NCNC3474_averageblipup_289_log_fc.mif NCNC5236_averageblipup_289_log_fc.mif
NCNC3172_averageblipup_289_log_fc.mif NCNC3311_averageblipup_289_log_fc.mif NCNC3475_averageblipup_289_log_fc.mif NCNC5237_averageblipup_289_log_fc.mif
NCNC3173_averageblipup_289_log_fc.mif NCNC3312_averageblipup_289_log_fc.mif NCNC3476_averageblipup_289_log_fc.mif NCNC5238_averageblipup_289_log_fc.mif
NCNC3174_averageblipup_289_log_fc.mif NCNC3313_averageblipup_289_log_fc.mif NCNC3477_averageblipup_289_log_fc.mif NCNC5239_averageblipup_289_log_fc.mif
NCNC3175_averageblipup_289_log_fc.mif NCNC3314_averageblipup_289_log_fc.mif NCNC3479_averageblipup_289_log_fc.mif NCNC5240_averageblipup_289_log_fc.mif
NCNC3176_averageblipup_289_log_fc.mif NCNC3316_averageblipup_289_log_fc.mif NCNC3480_averageblipup_289_log_fc.mif NCNC5242_averageblipup_289_log_fc.mif
NCNC3177_averageblipup_289_log_fc.mif NCNC3317_averageblipup_289_log_fc.mif NCNC3482_averageblipup_289_log_fc.mif NCNC5243_averageblipup_289_log_fc.mif
NCNC3178_averageblipup_289_log_fc.mif NCNC3318_averageblipup_289_log_fc.mif NCNC3483_averageblipup_289_log_fc.mif NCNC5244_averageblipup_289_log_fc.mif
NCNC3179_averageblipup_289_log_fc.mif NCNC3319_averageblipup_289_log_fc.mif NCNC3484_averageblipup_289_log_fc.mif NCNC5245_averageblipup_289_log_fc.mif
NCNC3180_averageblipup_289_log_fc.mif NCNC3320_averageblipup_289_log_fc.mif NCNC3485_averageblipup_289_log_fc.mif NCNC5246_averageblipup_289_log_fc.mif
NCNC3181_averageblipup_289_log_fc.mif NCNC3321_averageblipup_289_log_fc.mif NCNC3486_averageblipup_289_log_fc.mif NCNC5247_averageblipup_289_log_fc.mif
NCNC3182_averageblipup_289_log_fc.mif NCNC3322_averageblipup_289_log_fc.mif NCNC3487_averageblipup_289_log_fc.mif NCNC5248_averageblipup_289_log_fc.mif
NCNC3183_averageblipup_289_log_fc.mif NCNC3323_averageblipup_289_log_fc.mif NCNC3489_averageblipup_289_log_fc.mif NCNC5249_averageblipup_289_log_fc.mif
NCNC3184_averageblipup_289_log_fc.mif NCNC3324_averageblipup_289_log_fc.mif NCNC3490_averageblipup_289_log_fc.mif NCNC5250_averageblipup_289_log_fc.mif
NCNC3185_averageblipup_289_log_fc.mif NCNC3325_averageblipup_289_log_fc.mif NCNC3491_averageblipup_289_log_fc.mif NCNC5251_averageblipup_289_log_fc.mif
NCNC3186_averageblipup_289_log_fc.mif NCNC3327_averageblipup_289_log_fc.mif NCNC3492_averageblipup_289_log_fc.mif NCNC5252_averageblipup_289_log_fc.mif
NCNC3187_averageblipup_289_log_fc.mif NCNC3328_averageblipup_289_log_fc.mif NCNC3494_averageblipup_289_log_fc.mif NCNC5253_averageblipup_289_log_fc.mif
NCNC3188_averageblipup_289_log_fc.mif NCNC3329_averageblipup_289_log_fc.mif NCNC3495_averageblipup_289_log_fc.mif NCNC5254_averageblipup_289_log_fc.mif
NCNC3189_averageblipup_289_log_fc.mif NCNC3330_averageblipup_289_log_fc.mif NCNC3496_averageblipup_289_log_fc.mif NCNC5255_averageblipup_289_log_fc.mif
NCNC3190_averageblipup_289_log_fc.mif NCNC3331_averageblipup_289_log_fc.mif NCNC3498_averageblipup_289_log_fc.mif NCNC5256_averageblipup_289_log_fc.mif
NCNC3191_averageblipup_289_log_fc.mif NCNC3334_averageblipup_289_log_fc.mif NCNC3499_averageblipup_289_log_fc.mif NCNC5257_averageblipup_289_log_fc.mif
NCNC3192_averageblipup_289_log_fc.mif NCNC3335_averageblipup_289_log_fc.mif NCNC3500_averageblipup_289_log_fc.mif NCNC5274_averageblipup_289_log_fc.mif
NCNC3193_averageblipup_289_log_fc.mif NCNC3336_averageblipup_289_log_fc.mif NCNC3501_averageblipup_289_log_fc.mif NCNC5275_averageblipup_289_log_fc.mif
NCNC3194_averageblipup_289_log_fc.mif NCNC3337_averageblipup_289_log_fc.mif NCNC3502_averageblipup_289_log_fc.mif NCNC5276_averageblipup_289_log_fc.mif
NCNC3195_averageblipup_289_log_fc.mif NCNC3338_averageblipup_289_log_fc.mif NCNC3503_averageblipup_289_log_fc.mif NCNC5277_averageblipup_289_log_fc.mif
NCNC3196_averageblipup_289_log_fc.mif NCNC3339_averageblipup_289_log_fc.mif NCNC3505_averageblipup_289_log_fc.mif NCNC5278_averageblipup_289_log_fc.mif
NCNC3197_averageblipup_289_log_fc.mif NCNC3340_averageblipup_289_log_fc.mif NCNC3506_averageblipup_289_log_fc.mif NCNC5279_averageblipup_289_log_fc.mif
NCNC3198_averageblipup_289_log_fc.mif NCNC3341_averageblipup_289_log_fc.mif NCNC3507_averageblipup_289_log_fc.mif NCNC5280_averageblipup_289_log_fc.mif
NCNC3199_averageblipup_289_log_fc.mif NCNC3342_averageblipup_289_log_fc.mif NCNC3508_averageblipup_289_log_fc.mif NCNC5281_averageblipup_289_log_fc.mif
NCNC3200_averageblipup_289_log_fc.mif NCNC3343_averageblipup_289_log_fc.mif NCNC3509_averageblipup_289_log_fc.mif NCNC5282_averageblipup_289_log_fc.mif
NCNC3201_averageblipup_289_log_fc.mif NCNC3344_averageblipup_289_log_fc.mif NCNC3510_averageblipup_289_log_fc.mif NCNC5283_averageblipup_289_log_fc.mif
NCNC3202_averageblipup_289_log_fc.mif NCNC3345_averageblipup_289_log_fc.mif NCNC3511_averageblipup_289_log_fc.mif NCNC5284_averageblipup_289_log_fc.mif
NCNC3203_averageblipup_289_log_fc.mif NCNC3346_averageblipup_289_log_fc.mif NCNC3512_averageblipup_289_log_fc.mif NCNC5285_averageblipup_289_log_fc.mif
NCNC3204_averageblipup_289_log_fc.mif NCNC3347_averageblipup_289_log_fc.mif NCNC3513_averageblipup_289_log_fc.mif NCNC5286_averageblipup_289_log_fc.mif
NCNC3205_averageblipup_289_log_fc.mif NCNC3348_averageblipup_289_log_fc.mif NCNC3514_averageblipup_289_log_fc.mif NCNC5288_averageblipup_289_log_fc.mif
NCNC3206_averageblipup_289_log_fc.mif NCNC3349_averageblipup_289_log_fc.mif NCNC3515_averageblipup_289_log_fc.mif NCNC5289_averageblipup_289_log_fc.mif
NCNC3207_averageblipup_289_log_fc.mif NCNC3350_averageblipup_289_log_fc.mif NCNC3517_averageblipup_289_log_fc.mif NCNC5290_averageblipup_289_log_fc.mif
NCNC3208_averageblipup_289_log_fc.mif NCNC3351_averageblipup_289_log_fc.mif NCNC3518_averageblipup_289_log_fc.mif NCNC5291_averageblipup_289_log_fc.mif
NCNC3209_averageblipup_289_log_fc.mif NCNC3352_averageblipup_289_log_fc.mif NCNC3519_averageblipup_289_log_fc.mif NCNC5292_averageblipup_289_log_fc.mif
NCNC3210_averageblipup_289_log_fc.mif NCNC3353_averageblipup_289_log_fc.mif NCNC3520_averageblipup_289_log_fc.mif NCNC5293_averageblipup_289_log_fc.mif
NCNC3211_averageblipup_289_log_fc.mif NCNC3355_averageblipup_289_log_fc.mif NCNC3521_averageblipup_289_log_fc.mif NCNC5294_averageblipup_289_log_fc.mif
NCNC3212_averageblipup_289_log_fc.mif NCNC3356_averageblipup_289_log_fc.mif NCNC3522_averageblipup_289_log_fc.mif NCNC5295_averageblipup_289_log_fc.mif
NCNC3213_averageblipup_289_log_fc.mif NCNC3373_averageblipup_289_log_fc.mif NCNC3523_averageblipup_289_log_fc.mif NCNC5301_averageblipup_289_log_fc.mif
NCNC3214_averageblipup_289_log_fc.mif NCNC3374_averageblipup_289_log_fc.mif NCNC3524_averageblipup_289_log_fc.mif NCNC5303_averageblipup_289_log_fc.mif
NCNC3215_averageblipup_289_log_fc.mif NCNC3375_averageblipup_289_log_fc.mif NCNC3525_averageblipup_289_log_fc.mif NCNC5304_averageblipup_289_log_fc.mif
NCNC3216_averageblipup_289_log_fc.mif NCNC3376_averageblipup_289_log_fc.mif NCNC3527_averageblipup_289_log_fc.mif NCNC5305_averageblipup_289_log_fc.mif
NCNC3217_averageblipup_289_log_fc.mif NCNC3377_averageblipup_289_log_fc.mif NCNC3528_averageblipup_289_log_fc.mif NCNC5307_averageblipup_289_log_fc.mif
NCNC3218_averageblipup_289_log_fc.mif NCNC3378_averageblipup_289_log_fc.mif NCNC3529_averageblipup_289_log_fc.mif NCNC5308_averageblipup_289_log_fc.mif
NCNC3219_averageblipup_289_log_fc.mif NCNC3379_averageblipup_289_log_fc.mif NCNC3530_averageblipup_289_log_fc.mif NCNC5309_averageblipup_289_log_fc.mif
NCNC3221_averageblipup_289_log_fc.mif NCNC3380_averageblipup_289_log_fc.mif NCNC3531_averageblipup_289_log_fc.mif NCNC5310_averageblipup_289_log_fc.mif
NCNC3222_averageblipup_289_log_fc.mif NCNC3381_averageblipup_289_log_fc.mif NCNC3532_averageblipup_289_log_fc.mif NCNC5312_averageblipup_289_log_fc.mif
NCNC3223_averageblipup_289_log_fc.mif NCNC3382_averageblipup_289_log_fc.mif NCNC3533_averageblipup_289_log_fc.mif NCNC5314_averageblipup_289_log_fc.mif
NCNC3224_averageblipup_289_log_fc.mif NCNC3383_averageblipup_289_log_fc.mif NCNC3534_averageblipup_289_log_fc.mif NCNC5315_averageblipup_289_log_fc.mif
NCNC3225_averageblipup_289_log_fc.mif NCNC3384_averageblipup_289_log_fc.mif NCNC3535_averageblipup_289_log_fc.mif NCNC5316_averageblipup_289_log_fc.mif
NCNC3227_averageblipup_289_log_fc.mif NCNC3385_averageblipup_289_log_fc.mif NCNC3536_averageblipup_289_log_fc.mif
NCNC3229_averageblipup_289_log_fc.mif NCNC3386_averageblipup_289_log_fc.mif NCNC3537_averageblipup_289_log_fc.mif
I also check one of file using mrinfo
mrinfo NCNC3537_averageblipup_289_log_fc.mif
************************************************
Image name: "NCNC3537_averageblipup_289_log_fc.mif"
************************************************
Dimensions: 629442 x 1 x 1
Voxel size: 1 x 1 x 1
Data strides: [ 1 2 3 ]
Format: MRtrix
Data type: 32 bit float (little endian)
Intensity scaling: offset = 0, multiplier = 1
Transform: 1 0 0 0
0 1 0 0
0 0 1 0
command_history: /home/yehp/anaconda3/bin/population_template /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fod_input -mask_dir /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_structuralmask_input /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_wmfod_template.mif -voxel_size 1.0 (version=3.0.0)
fod2fixel -mask /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_template_mask.mif -fmls_peak_value 0.18 /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_wmfod_template.mif /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fixel_mask_peak0.18 -force (version=3.0.0)
warp2metric /data/NEURO2/ping/MUX_pipeline/NCNC3537/ncnc_3537_dwi_up_b0_dn_DRBUDDI_proc_LPS/NCNC35372averageblipup_289_wmfodtemplate_warp.mif -fc /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fixel_mask /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fc NCNC3537_averageblipup_289_fc.mif -force (version=3.0.0)
mrcalc /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_fc/NCNC3537_averageblipup_289_fc.mif -log /data/NEURO2/ping/MUX_pipeline/template/averageblipup_289_log_fc/NCNC3537_averageblipup_289_log_fc.mif -force (version=3.0.0)
mrtrix_version: 3.0.0
nfixels: 629442
It seems fine.
It failed too when using individual log_fc file as a input.
Ping
OK, thanks for the info. So the folder exists, but as far as I can tell, it doesn’t contain the expected index.mif
and directions.mif
files that are required for fixel files – see the specification of the format in the docs for details. How did you generate the data in this folder?