I wanna generate a whole brain Tractography,
So I follwed the instructions mentioned in the mrtrix3 documentation,
I used the following command " tckgen WM_FODs_CSD.mif 100K.tck -seed_image nodif_brain_mask.nii -maxlength 125 -select 100K "
I got the results attached, I didn’t undrestand why the fibers are not continuous ?!
I think you’ll find that at least most streamlines are continuous, but the default display is to only show the portions of the streamlines within a voxel’s thickness centred on the slice displayed – this may be what’s causing the confusion. Try playing around with the ‘crop to slab’ controls (near the bottom of the tractography tool).