# Mrclusterstats -negative option in 3.0.1

**URL:** https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118
**Category:** Uncategorized
**Created:** [September 23, 2020, 4:45am UTC](https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118 "2020-09-23T04:45:24Z")
**Posts on this page:** 4
**Page:** 1

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### Author: ![arbender](https://community.mrtrix.org/user_avatar/community.mrtrix.org/arbender/32/2309_2.png) [@arbender](https://community.mrtrix.org/u/arbender)
#### Post date: [September 23, 2020, 4:45am UTC](https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118/1 "2020-09-23T04:45:24Z")

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Dear MRtrix devs and community, I see that the -negative option has been eliminated in the latest version of mrclusterstats. Out of curiosity - what gives? Has this been implemented in an alternative framework, or is the intention that users will specify and run these contrasts separately? If the latter, I would kindly request it be included in future releases.

Kind regards,  
Drew

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### Author: ![bjeurissen](https://community.mrtrix.org/user_avatar/community.mrtrix.org/bjeurissen/32/28_2.png) [@bjeurissen](https://community.mrtrix.org/u/bjeurissen)
#### Post date: [September 23, 2020, 8:59pm UTC](https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118/2 "2020-09-23T20:59:26Z")

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All stats commands used to support only a single contrast (single line in the contrast file), but there was the option to also test the negative contrast.

As the stats commands now support contrast files with multiple lines, the user can now add multiple contrasts, including a negative contrast, so the negative option is no longer necessary.

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### Author: ![arbender](https://community.mrtrix.org/user_avatar/community.mrtrix.org/arbender/32/2309_2.png) [@arbender](https://community.mrtrix.org/u/arbender)
#### Post date: [September 23, 2020, 9:23pm UTC](https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118/3 "2020-09-23T21:23:57Z")

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Thanks for the fast response, Ben. That’s really helpful to know. Is that documented somewhere by chance?

Cheers,  
Drew

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### Author: ![rsmith](https://community.mrtrix.org/user_avatar/community.mrtrix.org/rsmith/32/2672_2.png) [@rsmith](https://community.mrtrix.org/u/rsmith)
#### Post date: [October 1, 2020, 1:54am UTC](https://community.mrtrix.org/t/mrclusterstats-negative-option-in-3-0-1/4118/4 "2020-10-01T01:54:16Z")

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> Is that documented somewhere by chance?

The best I can offer is the [changelog](https://community.mrtrix.org/t/mrtrix-3-0-rc3-3-0-0-changelog/3552/3) (“Major software changes” → “Statistical inference” → “Multiple hypotheses”), which admittedly failed to explicitly state that the `-negative` command-line option was correspondingly removed (now added).
