Hello,
I have a question about the output of mrinfo.
Why is the voxel size contain (?) using mrconvert? Why are the strides/transform different between dcm2nii and mrconvert (.nii)?
Will the voxel size (?) be a problem for later analysis?
This is the same file converted with 1) dcm2nii and 2) mrconvert (.mif) 3) mrconvert (.nii)
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dcm2nii output (.nii)
Dimensions: 96 x 96 x 74 x 160
Voxel size: 1.08333 x 1.08333 x 1.08 x 11.23
Data strides: [ -1 2 3 4 ]
Format: NIfTI-1.1 (GZip compressed)
Data type: signed 16 bit integer (little endian)
Intensity scaling: offset = 0, multiplier = 1
Transform: 0.9952 0 -0.09758 -44.87
0 1 -0 38.92
0.09758 0 0.9952 -58.49 -
mrconvert (.mif)
Dimensions: 96 x 96 x 74 x 160
Voxel size: 1.08333 x 1.08333 x 1.08 x ?
Data strides: [ -1 -2 3 4 ]
Format: MRtrix
Data type: unsigned 16 bit integer (little endian)
Intensity scaling: offset = 0, multiplier = 1
Transform: 0.9952 0 -0.09758 -44.87
0 1 0 38.92
0.09758 -0 0.9952 -58.49 -
mrconvert (.nii)
Dimensions: 96 x 96 x 74 x 160
Voxel size: 1.08333 x 1.08333 x 1.08 x ?
Data strides: [ -1 -2 3 4 ]
Format: NIfTI-1.1
Data type: unsigned 16 bit integer (little endian)
Intensity scaling: offset = 0, multiplier = 1
Transform: 0.9952 0 -0.09758 -44.87
0 1 0 38.92
0.09758 -0 0.9952 -58.49