Hello,
I just updated my MRtrix version.
Im trying to use:
dwifslpreproc dwi_preproc2.mif dwi_preproc3.mif -rpe_none -pe_dir AP
And I’m getting the following error when running the script:
mrinfo UNKOWN option -shell_indices
mrinfo: **[ERROR] unknown option "-shell_indices"**
dwifslpreproc: **[ERROR] Unhandled Python exception:**
dwifslpreproc: **[ERROR]** *ValueError: invalid literal for int() with base 10: ''*
dwifslpreproc: **[ERROR] Traceback:**
dwifslpreproc: **[ERROR]** */Users/miguel/mrtrix3/bin/dwifslpreproc:321 (in execute())*
dwifslpreproc: **[ERROR]** *shell_indices = [ [ int(i) for i in entry.split(',') ] for entry in image.mrinfo('dwi.mif', 'shell_indices').split(' ') ]*
Same error when only running
mrinfo -shell_indices (image)
Any help or comment would be appreciated.
Thanks