Hi developers,
I would appreciate if you help me to fix the following problem:
I am running this syntax using LUT file from FreeSurfer/v6.0 and Parcellation output from FastSurfer (the updated version of FreeSurfer):
tck2connectome -zero_diagonal -tck_weights_in …/Sub001_sift2_weights.csv …/Sub001_wb_1st_45_fod07_act_20M.tck Sub001_nodes_GMfix_v6_map.mif Sub001_Connectome_v6_map.csv -out_assignment Sub001_assignments_v6_map.csv
The warnings are:
[WARNING] The following nodes are missing from the parcellation image:
tck2connectome: [WARNING] 1, 31, 32, 50, 80, 81
tck2connectome: [WARNING] (This may indicate poor parcellation image preparation, use of incorrect or incomplete LUT file(s) in labelconvert, or very poor registration)
tck2connectome: [WARNING] Streamline weights file contains less entries than .tck file; only read 0 streamlines
tck2connectome: [WARNING] The following nodes do not have any streamlines assigned:
tck2connectome: [WARNING] 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 82, 83, 84
tck2connectome: [WARNING] (This may indicate a poor registration)[WARNING] The following