Understanding output of iFOD2 vs. SD_stream

I think the key point is that although it looks like a “fuzz-ball”, there should in fact be coherent structure; it’s just that with direct track visualisation it can be hard to see.

One thing that you could try is generating a DEC TDI, then visualising using the volume render mode in mrview:

tckmap tracks.tck -dec -template brain.mif - | mrview - -mode 3