# \#linux **URL:** https://community.mrtrix.org/tag/linux/4.md [Latest](https://community.mrtrix.org/latest.md) · [Categories](https://community.mrtrix.org/categories.md) · [Tags](https://community.mrtrix.org/tags.md) --- ## [Do different ubuntu version affect preprocessing output](https://community.mrtrix.org/t/do-different-ubuntu-version-affect-preprocessing-output/6932)
**Author:** [@math\_priyanka](https://community.mrtrix.org/u/math_priyanka)\ **Replies:** 0\ **Last updated:** [September 6, 2023, 11:52am UTC](https://community.mrtrix.org/t/do-different-ubuntu-version-affect-preprocessing-output/6932 "2023-09-06T11:52:36Z")
Hello, I’d like to know how different versions of Ubuntu might impact the preprocessing steps or final results when working with MRTrix. Has anyone observed significant differences between structural connectivity matric… --- ## [Mrview error on ubuntu22.04](https://community.mrtrix.org/t/mrview-error-on-ubuntu22-04/6897)
**Author:** [@Neda\_Mohammadi](https://community.mrtrix.org/u/Neda_Mohammadi)\ **Replies:** 0\ **Last updated:** [August 25, 2023, 3:33pm UTC](https://community.mrtrix.org/t/mrview-error-on-ubuntu22-04/6897 "2023-08-25T15:33:12Z")
Dear MRTrix community, I installed MRtrix on Ubuntu 22.04. through virtual machine (VMware). Whenever I try to run mrview I get this error: mrview: symbol lookup error: mrview: undefined symbol: \_\_cxa\_throw\_bad\_array\_… --- ## [Mrview error](https://community.mrtrix.org/t/mrview-error/332)
**Author:** [@archithrajan1](https://community.mrtrix.org/u/archithrajan1)\ **Replies:** 11\ **Last updated:** [July 24, 2023, 5:45am UTC](https://community.mrtrix.org/t/mrview-error/332 "2023-07-24T05:45:29Z")
Dear Experts, Apologies if it is repeated.I´m a novice with linux and I could only partially comprehend the ¨troubleshoot¨. Mrview throws the following error: libGL error: unable to load driver: nouveau\_dri.so libGL… --- ## [Installing on Windows Subsystem for Linux (WSL)](https://community.mrtrix.org/t/installing-on-windows-subsystem-for-linux-wsl/3637)
**Author:** [@jdtournier](https://community.mrtrix.org/u/jdtournier)\ **Replies:** 4\ **Last updated:** [October 19, 2022, 11:07am UTC](https://community.mrtrix.org/t/installing-on-windows-subsystem-for-linux-wsl/3637 "2022-10-19T11:07:19Z")
Microsoft recently released the Windows subsystem for Linux (WSL), which enables you to install and run a Linux environment on Windows 10 with near-native performance. This allows Windows users to access a range of resea… --- ## [Shell script error using MATLAB](https://community.mrtrix.org/t/shell-script-error-using-matlab/4977)
**Author:** [@CarlisleYun79](https://community.mrtrix.org/u/CarlisleYun79)\ **Replies:** 1\ **Last updated:** [May 13, 2022, 10:02am UTC](https://community.mrtrix.org/t/shell-script-error-using-matlab/4977 "2022-05-13T10:02:04Z")
I’m using the MATLAB 2019b for automatically preprocessing and I got this error when I used the command !mrview also other command likes mrconvert (Ubuntu 20.04) How can I solve it? --- ## [Linux static build fails](https://community.mrtrix.org/t/linux-static-build-fails/1493)
**Author:** [@marcomuc](https://community.mrtrix.org/u/marcomuc)\ **Replies:** 4\ **Last updated:** [November 3, 2021, 7:32am UTC](https://community.mrtrix.org/t/linux-static-build-fails/1493 "2021-11-03T07:32:57Z")
Hi all, I would like to use tckgen and tcksift2 on the HPC cluster of our university. Therefore, I\`m trying to build static executables by running ./configure -static -nogui ./build This is on the machine where a regul… --- ## [Standalone installation on Linux](https://community.mrtrix.org/t/standalone-installation-on-linux/3549)
**Author:** [@jdtournier](https://community.mrtrix.org/u/jdtournier)\ **Replies:** 0\ **Last updated:** [April 22, 2020, 10:06am UTC](https://community.mrtrix.org/t/standalone-installation-on-linux/3549 "2020-04-22T10:06:57Z")
In some cases, users need to install MRtrix3 on systems running older distributions, over which they have little or no control, for example centrally-managed HPC clusters. In such cases, there genuinely is no way to inst… --- ## [Error during configure and build MRtrix3](https://community.mrtrix.org/t/error-during-configure-and-build-mrtrix3/4096)
**Author:** [@Yueming](https://community.mrtrix.org/u/Yueming)\ **Replies:** 4\ **Last updated:** [September 20, 2020, 2:42am UTC](https://community.mrtrix.org/t/error-during-configure-and-build-mrtrix3/4096 "2020-09-20T02:42:09Z")
I got one error during the configure step after I upgrade all dependencies, and there were more error during the build step. Here is the configure log: REPORT: MRtrix build type requested: release version REPORT: D… --- ## [ROI extraction from wmparc.mgz](https://community.mrtrix.org/t/roi-extraction-from-wmparc-mgz/3900)
**Author:** [@neuronoob](https://community.mrtrix.org/u/neuronoob)\ **Replies:** 1\ **Last updated:** [July 10, 2020, 3:18pm UTC](https://community.mrtrix.org/t/roi-extraction-from-wmparc-mgz/3900 "2020-07-10T15:18:17Z")
Hello everyone :slight\_smile: I’m trying to perform a diffusion analysis with MRtrix, but I’m having some problems after the “recon-all” step. I need to extract Broca’s and Wernicke’s areas from the T1 parcellated image… --- ## [MRtrix3 installation on Fedora 24](https://community.mrtrix.org/t/mrtrix3-installation-on-fedora-24/487)
**Author:** [@julien](https://community.mrtrix.org/u/julien)\ **Replies:** 2\ **Last updated:** [June 11, 2020, 9:25am UTC](https://community.mrtrix.org/t/mrtrix3-installation-on-fedora-24/487 "2020-06-11T09:25:02Z")
Hello everyone, After some trials and errors and help from the MRtrix community, I managed to build MRtrix3 on Linux Fedora 24, so I thought I would share what worked for me. So the first thing is that some the packa… --- ## [Installing using Windows Subsystem for Linux](https://community.mrtrix.org/t/installing-using-windows-subsystem-for-linux/1005)
**Author:** [@Daniel\_Saad](https://community.mrtrix.org/u/Daniel_Saad)\ **Replies:** 1\ **Last updated:** [July 4, 2017, 3:42pm UTC](https://community.mrtrix.org/t/installing-using-windows-subsystem-for-linux/1005 "2017-07-04T15:42:24Z")
After a successful build using Windows Subsystem for Linux (Bash on Ubuntu on Windows) and ./set\_path, MRView does not work. It reads: mrview: cannot connect to X server Config and build were ok so I am unsure wh… --- ## [Configure error linking qt Ubuntu 16.04](https://community.mrtrix.org/t/configure-error-linking-qt-ubuntu-16-04/678)
**Author:** [@Samuel\_Groeschel](https://community.mrtrix.org/u/Samuel_Groeschel)\ **Replies:** 8\ **Last updated:** [June 5, 2019, 11:28pm UTC](https://community.mrtrix.org/t/configure-error-linking-qt-ubuntu-16-04/678 "2019-06-05T23:28:59Z")
Sorry for this basic installation question, see configure.log below. Has anyone come across this already? Is it to do with my qt-installation? Already tried it with both qt4 and qt5. The latest version seems to be 5.8… --- ## [Linux: avoiding slow performance for piped images](https://community.mrtrix.org/t/linux-avoiding-slow-performance-for-piped-images/1830)
**Author:** [@jdtournier](https://community.mrtrix.org/u/jdtournier)\ **Replies:** 0\ **Last updated:** [August 9, 2018, 12:58pm UTC](https://community.mrtrix.org/t/linux-avoiding-slow-performance-for-piped-images/1830 "2018-08-09T12:58:41Z")
When MRtrix3 command pass data through a Unix pipe, what happens by default is that a temporary image is created, and held on the /tmp/ filesystem; the end stage of the pipe is responsible for deleting the file. This can… --- ## [Linux: slow performance when handling large images](https://community.mrtrix.org/t/linux-slow-performance-when-handling-large-images/1831)
**Author:** [@jdtournier](https://community.mrtrix.org/u/jdtournier)\ **Replies:** 0\ **Last updated:** [August 9, 2018, 1:00pm UTC](https://community.mrtrix.org/t/linux-slow-performance-when-handling-large-images/1831 "2018-08-09T13:00:35Z")
Under certain circumstances, MRtrix3 commands seem to stall when handling large images, even when running operating on local files. The most likely explanation lies with the Linux kernel’s handling of dirty pages. Dirty… --- ## [Errors running ./build](https://community.mrtrix.org/t/errors-running-build/181)
**Author:** [@johnsmith](https://community.mrtrix.org/u/johnsmith)\ **Replies:** 11\ **Last updated:** [August 8, 2018, 7:47pm UTC](https://community.mrtrix.org/t/errors-running-build/181 "2018-08-08T19:47:38Z")
I would like to install MRtrix3 on Lubuntu 12.04. I ran ./configure: fred@fred:~/mrtrix3$ ./configure MRtrix build type requested: release Detecting OS: linux Checking for C++11 compliant compiler \[/usr/bin/g++-4.8\]… --- ## [Mrview - segmentationfault (core dump) + Ubuntu 16.04](https://community.mrtrix.org/t/mrview-segmentationfault-core-dump-ubuntu-16-04/185)
**Author:** [@Ralf](https://community.mrtrix.org/u/Ralf)\ **Replies:** 34\ **Last updated:** [August 8, 2018, 7:46pm UTC](https://community.mrtrix.org/t/mrview-segmentationfault-core-dump-ubuntu-16-04/185 "2018-08-08T19:46:59Z")
Hi Mrtrixler, I updated my machine to 16.04 Ubuntu and I installed mrtrix the latest Version. Use the proprietary NVIDIA Driver (361.42). I can start mrview. I can start mrview with loading anatomie. What I am not able… --- ## [Error during installing MRtrix](https://community.mrtrix.org/t/error-during-installing-mrtrix/1126)
**Author:** [@mina.fakhry](https://community.mrtrix.org/u/mina.fakhry)\ **Replies:** 1\ **Last updated:** [August 22, 2017, 7:14pm UTC](https://community.mrtrix.org/t/error-during-installing-mrtrix/1126 "2017-08-22T19:14:46Z")
I got a lot of errors during the ./configure step, and passed all of them except this one: MRtrix build type requested: release Detecting OS: linux Looking for compiler \[clang++\]: clang version 3.4.2 (tags/RELEASE\_34/d… --- ## [Linux fs recommendations](https://community.mrtrix.org/t/linux-fs-recommendations/891)
**Author:** [@maedoc](https://community.mrtrix.org/u/maedoc)\ **Replies:** 3\ **Last updated:** [May 16, 2017, 12:27pm UTC](https://community.mrtrix.org/t/linux-fs-recommendations/891 "2017-05-16T12:27:41Z")
Hi I'm puzzling through a filesystem related performance issue on a new Ubuntu Dell SSD workstation, which is showing abysmal performance for some I/O intensive steps. For example, using the -stride option on mrconvert … --- ## [NVIDIA drivers for Mrview](https://community.mrtrix.org/t/nvidia-drivers-for-mrview/822)
**Author:** [@rishmav](https://community.mrtrix.org/u/rishmav)\ **Replies:** 2\ **Last updated:** [April 11, 2017, 1:57am UTC](https://community.mrtrix.org/t/nvidia-drivers-for-mrview/822 "2017-04-11T01:57:55Z")
Hi All, I have just returned from mat leave and my baby brain accidentally updated my nvidia driver. Now Mrview has stopped working properly! Could you please let me know which version of nvidia would be appropriate to g… --- ## [Error processing project file: /tmp/tmpeXDMTO/qt.pro](https://community.mrtrix.org/t/error-processing-project-file-tmp-tmpexdmto-qt-pro/288)
**Author:** [@Sarbani](https://community.mrtrix.org/u/Sarbani)\ **Replies:** 6\ **Last updated:** [March 16, 2017, 12:18am UTC](https://community.mrtrix.org/t/error-processing-project-file-tmp-tmpexdmto-qt-pro/288 "2017-03-16T00:18:54Z")
Hi, I am getting error as below while running command ,/configure. .....DQ67SW:~/mrtrix3$ ./configure MRtrix build type requested: release Detecting OS: linux Checking for C++11 compliant compiler \[g++\]: 4.8 - test… --- ## [ZLIB\_CFLAGS issue on Ubuntu 16.04 LTS](https://community.mrtrix.org/t/zlib-cflags-issue-on-ubuntu-16-04-lts/671)
**Author:** [@lu\_lita](https://community.mrtrix.org/u/lu_lita)\ **Replies:** 4\ **Last updated:** [January 20, 2017, 4:55pm UTC](https://community.mrtrix.org/t/zlib-cflags-issue-on-ubuntu-16-04-lts/671 "2017-01-20T16:55:31Z")
Hi there, I've been reading through other posts regarding ./configure and zlib, but it was running on Windows (http://community.mrtrix.org/t/error-relating-to-c-compiler-when-running-configure-on-windows/454). I'm havi… --- ## [Installation problems on Fedora 24](https://community.mrtrix.org/t/installation-problems-on-fedora-24/483)
**Author:** [@julien](https://community.mrtrix.org/u/julien)\ **Replies:** 5\ **Last updated:** [October 4, 2016, 8:09am UTC](https://community.mrtrix.org/t/installation-problems-on-fedora-24/483 "2016-10-04T08:09:43Z")
Hello, I'm getting an error trying to install MRtrix3 on Fedora 24 and g++ version 6.2. The error occurs at the ./configure stage. Here is a full copy of configure.log : REPORT: MRtrix build type requested: REPORT:… --- ## [Compilation on Ubuntu 14.04 failed](https://community.mrtrix.org/t/compilation-on-ubuntu-14-04-failed/125)
**Author:** [@Meng](https://community.mrtrix.org/u/Meng)\ **Replies:** 12\ **Last updated:** [July 20, 2016, 9:03am UTC](https://community.mrtrix.org/t/compilation-on-ubuntu-14-04-failed/125 "2016-07-20T09:03:21Z")
Thanks for this new version. I failed to compile it on ubuntu 14.04. The problem is related with QT (couldbe the libraries). I am not sure which one is missing based on the configure log file. Any idea on this issue? T… --- ## [Segmentation Fault with any command](https://community.mrtrix.org/t/segmentation-fault-with-any-command/342)
**Author:** [@AmirHussein](https://community.mrtrix.org/u/AmirHussein)\ **Replies:** 5\ **Last updated:** [July 19, 2016, 12:55pm UTC](https://community.mrtrix.org/t/segmentation-fault-with-any-command/342 "2016-07-19T12:55:17Z")
Hi, I’ve just installed MRtrix 3.0 on my fresh installed ubuntu 16.04 using the installation guides on the site. I’m trying to use preprocessed diffusion data in ExploreDTI (DWIs+B0 output file) inside MRtrix, but any c… --- ## [openGL mrview errors + rhel6 + hpc](https://community.mrtrix.org/t/opengl-mrview-errors-rhel6-hpc/326)
**Author:** [@lweakley](https://community.mrtrix.org/u/lweakley)\ **Replies:** 5\ **Last updated:** [June 29, 2016, 2:12pm UTC](https://community.mrtrix.org/t/opengl-mrview-errors-rhel6-hpc/326 "2016-06-29T14:12:05Z")
Hello kind MRtrixers. Hope you can help me with an issue I'm having. Please bear with me, the following might be a little long. My group recently installed mrtrix 0.3.14 on one of our clusters running rhel6 for a g… --- ## [Problem with Qt qmake installing MRtrix](https://community.mrtrix.org/t/problem-with-qt-qmake-installing-mrtrix/259)
**Author:** [@AmirHussein](https://community.mrtrix.org/u/AmirHussein)\ **Replies:** 3\ **Last updated:** [May 26, 2016, 1:56pm UTC](https://community.mrtrix.org/t/problem-with-qt-qmake-installing-mrtrix/259 "2016-05-26T13:56:48Z")
Hi all, I’m trying to install MRtrix on Ubuntu 14.04. I’ve downloaded all the dependencies, but when I run /.configure it gives me this: Detecting OS: linux Checking for C++11 compliant compiler \[g++\]: 4.8 - tested o… --- ## [Compile Error on Ubuntu 16.04](https://community.mrtrix.org/t/compile-error-on-ubuntu-16-04/183)
**Author:** [@NicholasDowson](https://community.mrtrix.org/u/NicholasDowson)\ **Replies:** 7\ **Last updated:** [April 27, 2016, 9:04am UTC](https://community.mrtrix.org/t/compile-error-on-ubuntu-16-04/183 "2016-04-27T09:04:22Z")
Dear mrtrix, The following compile error occurs on Ubuntu 16.04. I guess the newer g++ is a bit more stringent about template syntax. If I manage to resolve this I will post the modifications to the code. If you mana…