Dear MRtrix experts,
I created a whole-brain tractograms using pipeline described in BATMAN tutorial. Now, I want to obtain streamlines between the cerebellum and thalamic nuclei. I got masks of cerebellum and thalamus from atlases and transformed them to individual space. I used tckedit
with -include option, but the result is not the one that I aim for. Also, I tried -mask option but it does not show me the connections between two regions.
Here is the result for -include option:
Could you guide me on how can I remove unwanted streamlines that go from thalamus to frontal region?