Thanks for the amazing tools. I have registered the AAL3 parcellation to individual T1 following the step provided in Problems with AAL parcellation - #14 by stellamarissanchez89. However,I still cannot figure out how to do connectomic analysis in AAL3 atlas. When I tried to run the labelconvert AALtoT1.nii.gz ROI_MNI_V6_vol.txt aal3.txt AALtoT1_relabel.nii.gz
There is no aal3.txt provided in the labelconvert document in mrtrix and the aal3.nii.txt downloaded from the aal3_for_spm12.tar.gz does not apply either.
Is there an approach to solve the issue?