I created a tractography in DSI studio, but when I view with mrview on same MRI volume they dont align.
I previously regridded my segmentations from Slicer application with mrgrid function. But, for tractography wise. What should I do?
Hello, I had the same problem, what you need to do is to coregister some of the scalar volumes (FA for example) generated by DSI studio and by MRTrix ( dwi2tensor, tensor2metric) and then apply the transformation to the streamlines.
oh thats great, what I did was exporting .tck files as .obj files from DSI studio and then resizing and relocating them by utilizing python.
Slicer has the best visualization by 3D rendering. I would suggest