Connectome2tck output all tracts generated to a single file

Hello All,

I am currently trying to implement connectome2tck in a structural connectivity matrix created and keep running into an issue where each tract generated is created as an individual output (i.e. connectome2tck_tract1.tck, connectome2tck_tract2.tck, etc.). Is there anyway to have these all be outputted to a single .tck file?



Hi Ricardo,

The -files option in connectome2tck controls how the streamlines assigned to various nodes will be arranged into one or more output track files. In your case, if you want the command to produce just a single .tck file containing all relevant streamlines, you want to use “-files single”.


thank you sir! i appreciate you!