Hello,
I am trying to learn how to analyze DWI images.
I have tried on my own data, but I had a bug with fslgrad on the bias correction function, which I will not detail, because I have solved it modifying some typo errors.
Then I have tried to train on data from andy’s brain blog videos, and followed his tuto.
At the first video, to convert format to mrtrix compatible format, when I use -fslgrad, I have the same bug that I used to have before :
mrconvert sub-CON02_ses-preop_acq-AP_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval
I get error :
mrconvert: [ERROR] Expected exactly 2 arguments (1 supplied)
mrconvert: [ERROR] Usage: mrconvert input output
mrconvert: [ERROR] Yours: mrconvert sub-CON02_ses-preop_acq-AP_dwi.mif
So I have tried to swap the arguments and tried:
mrconvert -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval sub-CON02_ses-preop_acq-AP_dwi.mif
But still errors:
mrconvert: [ERROR] Expected exactly 2 arguments (1 supplied)
mrconvert: [ERROR] Usage: mrconvert input output
mrconvert: [ERROR] Yours: mrconvert sub-CON02_ses-preop_acq-AP_dwi.mif
What am I doing wrong? It’s basically the same scripts as in his videos, and still it does not work…
I just re-installed mrtrix3 yesterday, so basically I have the latest version I guess?
Thanks for you help,
Best
Fabien