Hi MRtrix community,
I have been trying to run the dwi2response dhollander command and have ran into a few errors regarding ?empty mask. I have created my own mask with dwi2mask and inserted it into the command, however mrtrix is still not using the provided mask and instead generating a new one, resulting in the same error message. If anyone has insight on what to do it would be much appreciated! Thanks in advance!
Command: dwiresponse dhollander -mask mask.mif input.mif out_wm.txt out_gm.txt out_csf.txt
Error message:
mrstats: [ERROR] Cannot output statistic of interest; no values read (empty mask?)
dwi2response: [ERROR] Error trying to calculate statistic ‘median’ from image ‘safe_sdm.mif’
Cheers,
Perri