I am working on the minimally preprocessed dwi data in the human connectome project. I would like to compare FODs acorss different subjects in the dataset. Would it be possible to run the following commands: dwibiascorrect --> dwi2fod --> mtnormalise to get what I want. Thank you very much!
Hope you’re doing well.
You don’t need
dwibiascorrect as long as you’re using
mtnormalise. The latter performs both global intensity normalisation as well as bias field correction, more robustly than
dwibiascorrect generally does.
On a similar note, take a look at these 2 recent topics and the replies; they’re also providing some additional insight:
Hope that helps!
Cheers & take care,
Thanks Thijs. I will use mtnormalise only to correct FODs in HCP.