Dear MRtrix experts,
I am trying to use MRtrix via the supercomputer server of my research institution. I have installed the MRtrix using the following command lines.
module load python/3.8.x-anaconda
conda create -n mrtrix
conda activate mrtrix
conda install -c mrtrix3 mrtrix3
I also installed fsl for dwifslpreproc using the below command.
conda install -c conda-forge fslpy
However, dwifslpreproc doesn’t run with the below error message.
dwifslpreproc: Note that this script makes use of commands / algorithms that have relevant articles for citation; INCLUDING FROM EXTERNAL SOFTWARE PACKAGES. Please consult the help page (-help option) for more information.
dwifslpreproc: [ERROR] Environment variable FSLDIR is not set; please run appropriate FSL configuration script
Could you please let me know what is an issue here and how to resolve?