Hi,
I am getting error in executing dwi2response command. The command and error is shown below.
Getting no clue why it is giving me error “No such file or directory”.
I have DWI.mif file present in my Mrtrix3 folder.
Is it something related to msmt_5tt?
I try to use scripts/src/dwi2response/msmt_5tt , but got error Error: invalid choice: ‘scripts/src/dwi2response/msmt_5tt’ (choose from ‘manual’, ‘tournier’, ‘tax’, ‘fa’, ‘msmt_5tt’)
..
koushik@koushik-DQ67SW:~/mrtrix3$ scripts/dwi2response msmt_5tt dwi.mif 5TT.mif
RF_GM.txt RF_WM.txt RF_CSF.txt -voxels RF_voxels.mif
dwi2response:
dwi2response: Note that this script makes use of commands / algorithms that have
relevant articles for citation; INCLUDING FROM EXTERNAL SOFTWARE PACKAGES. Plea
se consult the help page (-help option) for more information.
dwi2response:
dwi2response: Generated temporary directory: /tmp/dwi2response-tmp-EX8ZJO/
Command: mrconvert /home/koushik/mrtrix3/5TT.mif /tmp/dwi2response-tmp-EX8ZJO/5t
t.mif
Command: mrconvert /home/koushik/mrtrix3/dwi.mif /tmp/dwi2response-tmp-EX8ZJO/dw
i.mif -stride 0,0,0,1
dwi2response: Changing to temporary directory (/tmp/dwi2response-tmp-EX8ZJO/)
Traceback (most recent call last):
File "scripts/dwi2response", line 110, in <module>
size = getHeaderInfo('dwi.mif', 'size').split()
File "/home/koushik/mrtrix3/scripts/lib/getHeaderInfo.py", line 7, in getHeade
rInfo
proc = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=None)
File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
errread, errwrite)
File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
Quick response please.
Thanks