Hello,
I’m using the glasser360 atlas, which is registered in the MNI space, and want to register it to my DWI space. To do this, I’m starting with this command (as in the BATMAN tutorial), which works fine for registering my T1 to DWI:
flirt -in {dwi} ref {atlas} -interp nearestneighbour -dof 6 -omat {transform_mat}.mat
For some reason, when I try this, I get the following error:
Image Exception : #22 :: Failed to read volume /rds/general/user/hsa22/ephemeral/camcan/atlas/glasser360mni.nii.gz
Error : No image files match: /rds/general/user/hsa22/ephemeral/camcan/atlas/glasser360mni
Failed to read volume /rds/general/user/hsa22/ephemeral/camcan/atlas/glasser360mni.nii.gz
Error : No image files match: /rds/general/user/hsa22/ephemeral/camcan/atlas/glasser360mni
transformconvert: [ERROR] Unable to open numerical data text file "/rds/general/user/hsa22/ephemeral/CAMCAN/dMRI_outputs/mrtrix/CC710858/reconstruction/atlas_reg/CC710858_atlas2dwi_fsl.mat": No such file or directory
Not sure what a no image file match error is, considering it’s a normal .nii.gz file. I checked it on mri cro and it opens fine, not sure how to fix. Help is really appreciated!
Thanks,
Hana