I am a complete beginner in this domain.
I’ve been trying to use dwi2response msmt_5tt to obtain multi-shell, multi-tissue response functions. I run the following command:
dwi2response msmt_5tt DWI.mif 5TT.mif RF_WM.txt RF_GM.txt RF_CSF.txt -voxels RF_voxels.mif
according to the third step of this documentation, I am using HCP dataset:
When I was testing on one subject, the following error came up:
dwi2response: dwi2response: [ERROR] Command failed: mrconvert /Users/sahaa2/Desktop/599671/T1w/Diffusion/5TT.mif /Users/sahaa2/Desktop/599671/T1w/Diffusion/dwi2response-tmp-PS9G5X/5tt.mif (msmt_5tt.py:27) dwi2response: Output of failed command: mrconvert: [ERROR] failed to open key/value file "/Users/sahaa2/Desktop/599671/T1w/Diffusion/5TT.mif": No such file or directory mrconvert: [ERROR] error opening image "/Users/sahaa2/Desktop/599671/T1w/Diffusion/5TT.mif" dwi2response: dwi2response: Script failed while executing the command: mrconvert /Users/sahaa2/Desktop/599671/T1w/Diffusion/5TT.mif /Users/sahaa2/Desktop/599671/T1w/Diffusion/dwi2response-tmp-PS9G5X/5tt.mif dwi2response: For debugging, inspect contents of temporary directory: /Users/sahaa2/Desktop/599671/T1w/Diffusion/dwi2response-tmp-PS9G5X/
Any idea how to fix the issue?
These are the temporary directory contents: command.txt, cwd.txt, dwi.mif, error.txt, log.txt.