Hello MRtrix community,
I have a dataset that was processed according to the pipeline described here:
I want to generate a study-specific FA template, but I only see mention of an FA template in the single-tissue CSD pipeline documentation, via the command “dwinormalise group”. Since I followed the multi-tissue pipeline, the data were normalized using the “mtnormalise” command (which normalizes FOD images), and I do not have an FA template output.
Is it possible for me to generate an FA template from the population template WM_FOD image?
Thanks for any advice!