Fibre density and cross-section - Multi-tissue CSD Guide

Hi,

I am running through the documentation notes for fibre density and cross-section (multi-tissue CSD - Fibre density and cross-section - Multi-tissue CSD — MRtrix 3.0 documentation).

In step 18 for computing a combined measure of fibre density and cross-section (FDC), it has the following code;

for_each * : mrcalc …/template/fd/IN.mif …/template/fc/IN.mif -mult …/template/fdc/IN.mif

I have followed the guide exactly and nowhere is a fd/IN.mif file created. If anyone can provide me any help I’d be very appreciative.

Thanks.

hello Archie
May be this Batch processing with for_each — MRtrix 3.0 documentation will help you understand the result.

Kitty