run the command again with the -debug option(It is too long so I just pos a part of the output here):
dwi2mask: [done] optimising threshold
dwi2mask: [DEBUG] initialising threads...
dwi2mask: [DEBUG] launching 4 threads "loop threads"...
dwi2mask: [ 0%] thresholding...
dwi2mask: [DEBUG] waiting for completion of threads "loop threads"...
dwi2mask: [100%] thresholding...
dwi2mask: [DEBUG] threads "loop threads" completed OK
dwi2mask: [100%] thresholding
dwi2mask: [ . ] computing dwi brain mask...
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "mean b=0 image"...
dwi2mask: [DEBUG] image "mean b=0 image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "temporary mask"...
dwi2mask: [DEBUG] image "temporary mask" loaded
dwi2mask: [DEBUG] image "temporary mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] median adapter for image "DWI mask" initialised with extent [ 3 3 3 ]
dwi2mask: [DEBUG] initialising threads...
dwi2mask: [DEBUG] launching 4 threads "loop threads"...
dwi2mask: [DEBUG] waiting for completion of threads "loop threads"...
dwi2mask: [DEBUG] threads "loop threads" completed OK
dwi2mask: [ .] computing dwi brain mask...
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [ . ] computing dwi brain mask...
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [ . ] computing dwi brain mask...
dwi2mask: [DEBUG] deleting scratch buffer for image "temporary mask"...
dwi2mask: [DEBUG] image "temporary mask" unloaded
dwi2mask: [done] computing dwi brain mask
dwi2mask: [DEBUG] deleting scratch buffer for image "DWI mask"...
dwi2mask: [DEBUG] image "DWI mask" unloaded
dwi2mask: [INFO] creating image "S186513_mask1.nii"...
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] creating empty file "S186513_mask1.nii"
dwi2mask: [DEBUG] resizing file "S186513_mask1.nii" to 21234016
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] memory-mapping file "S186513_mask1.nii"...
dwi2mask: [DEBUG] "S186513_mask1.nii" appears to reside on a networked filesystem - using delayed write-back
dwi2mask: [DEBUG] file "S186513_mask1.nii" held in RAM at 0x75d6e0, size 21233664
dwi2mask: [DEBUG] image "S186513_mask1.nii" loaded
dwi2mask: [DEBUG] image "S186513_mask1.nii" initialised with strides = [ -1 -512 262144 ], start = 262143, using indirect IO
dwi2mask: [. ] applying mask cleaning filter...
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "temporary input mask"...
dwi2mask: [DEBUG] image "temporary input mask" loaded
dwi2mask: [DEBUG] image "temporary input mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "temporary output mask"...
dwi2mask: [DEBUG] image "temporary output mask" loaded
dwi2mask: [DEBUG] image "temporary output mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "temporary mask"...
dwi2mask: [DEBUG] image "temporary mask" loaded
dwi2mask: [DEBUG] image "temporary mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "deletion mask"...
dwi2mask: [DEBUG] image "deletion mask" loaded
dwi2mask: [DEBUG] image "deletion mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "largest component"...
dwi2mask: [DEBUG] image "largest component" loaded
dwi2mask: [DEBUG] image "largest component" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "largest component"...
dwi2mask: [DEBUG] image "largest component" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "deletion mask"...
dwi2mask: [DEBUG] image "deletion mask" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "deletion mask"...
dwi2mask: [DEBUG] image "deletion mask" loaded
dwi2mask: [DEBUG] image "deletion mask" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "largest component"...
dwi2mask: [DEBUG] image "largest component" loaded
dwi2mask: [DEBUG] image "largest component" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "largest component"...
dwi2mask: [DEBUG] image "largest component" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "deletion mask"...
dwi2mask: [DEBUG] image "deletion mask" unloaded
dwi2mask: [DEBUG] sanitising image information...
dwi2mask: [DEBUG] allocating scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" loaded
dwi2mask: [DEBUG] image "scratch image" initialised with strides = [ -1 -512 262144 ], start = 262143, using direct IO
dwi2mask: [DEBUG] deleting scratch buffer for image "scratch image"...
dwi2mask: [DEBUG] image "scratch image" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "temporary mask"...
dwi2mask: [DEBUG] image "temporary mask" unloaded
dwi2mask: [ . ] applying mask cleaning filter...
dwi2mask: [DEBUG] deleting scratch buffer for image "temporary output mask"...
dwi2mask: [DEBUG] image "temporary output mask" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "temporary input mask"...
dwi2mask: [DEBUG] image "temporary input mask" unloaded
dwi2mask: [done] applying mask cleaning filter
dwi2mask: [INFO] writing back contents of mapped file "S186513_mask1.nii"...
dwi2mask: [DEBUG] image "S186513_mask1.nii" unloaded
dwi2mask: [DEBUG] deleting scratch buffer for image "brain mask"...
dwi2mask: [DEBUG] image "brain mask" unloaded
*** Error in `dwi2mask': free(): invalid pointer: 0x0000000000755600 ***
Aborted