Help Making Figures/Scatterplot?

2

Hi Ivan,

Here is a potential plan of attack

  1. get a fixel mask of the region (for example, CST). This can be computed using tck2fixel $TractSeg_region_tck $fixel_directory_in $fixel_masks_dir $Region_fixel_mask (assuming that TractSeg was used to generate the CST bundle).
  2. compute the average FDC metric for each subject in the region. This can be done using mrstats <FDC_subject#.mif> -mask $Region_fixel_mask. To print out only the mean, consider adding in the option -output mean. Loop through the subject list and print (and append) the output to a text file (along with the subject label).

See here and here for more information on this topic :smiley:

Cheers,
Arkiev

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