How do I get mrtrix3 to recognise my files in Windows10?

1

Trying to use connectomestats, but getting errors like this:

connectomestats: [ERROR] Input connectome file not found: “C:/Users/Kavinash/Desktop/Desikan_2mm/NBS/VN_REST\filename.txt”

MSYS2 runs like a UNIX machine, but I have no idea how to get it to recognise the files on my Windows machine? Any ideas?

Kavinash

2

Indeed. Replace C:\ with /c/, and use the forward slash as the path separator. For your example:

/c/Users/Kavinash/Desktop/Desikan_2mm/NBS/VN_REST/filename.txt
3

Thanks jdtournier, I’ll give that a go.

I did get something working, by establishing an SSH connection with my local machine and transferred the files to the MSYS2 machine.