How to get X Y Z position values of each label from HCP atlas

Dear all,

I have HCP atlas without any xyz coordinate positions, i would like to know the position of each label in ( MNI space) how can i possibly obtain it.


Hi Vasudev,

The next MRtrix3 update should come with a new command labelstats to do precisely this. It’s not yet even merged into the development branch, but you can nevertheless obtain the raw source code here. If you download that file into the MRtrix3 cmd/ directory and re-run the build script, the new command should become available; or better yet, set it up as an external MRtrix3 project as described in the manuscript.