Dear expert,
I want see the position relationship between given fibers and deep neural structure in volume-render mode of mrview. However, I do not know how to use “clip planes” tool and can not find enough relevant information on this. Would you Please show me. Thank you!
Best,
Zhang Hui
I freely admit this is not the best documented feature of mrview
…
Here’s a quick introduction:
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Switch to volume render mode
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Open the View tool – you should see the clip plane options showing (it only shows up when in volume render mode)
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Add as many clip planes as you need using the + button
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To manipulate the position / orientation of the clip plane(s), highlight them on the list (on the View tool panel), and use the normal pan/rotate mouse operations that you’d normally use to manipulate the projection of the image: when clip planes are selected, these operations apply to the clip plane(s), leaving the projection otherwise unmodified.
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Don’t forget to unselect the clip planes when you’re done so you can interact with the display normally: just click on a blank part of the clip planes list.
Thank you very much! Can I clip the fibers or edges of mrtrix displayed as streamline with the “clip plane” option?
Sorry, I’m afraid not… It’s not the first time this has been requested, though. If I ever find the time, I might look into it…