I am trying to convert freesurfer surfaces to partial volum with mesh2voxel
I try with the lh.pial surface which I converted to vtk with meshconvert (or mris_convert from freesurfer)
then when using:
mesh2voxel surfac.vtk T1.nii pve_result.nii
the output is shifted compare to the original T1 (whereas it was correct with freeview)
I tried the 4 option -transform for the meshconvert function, but wihtout success : I optained empty results, except with I do not use the -transform argument. In this case I get a shifted pve volume.
Any hints to get a perfect match ?