Hi MRtrix3 community,
Hopefully you can help !
I am trying to register wmfod_norm to T1 by registering bo to T1 and applying the transformation to wmfod_norm. First of all, I need to convert wmfod_norm.mif to nifti file to perform registration.
I used mrconvert to do it → mrconvert wmfod_norm.mif wmfod_norm.nii.gz.
Unfortunately, the orientation changed and I don’t seem to understand why or find the solution.
Thank you in advance for your assistance