Dear Mrtrix3 experts,
I have finished seeding fibers and the tractography was biologically apparent. I did not have any troubles with tck2connectome even. After getting connectivity matrix, I did some thresholding to get a desire network density. Then I compare the brain network to about 100 random networks which were generated from the brain network by preserving degree distribution. However, network features like global efficiency turned out to be same in both brain and random networks which is strange to me. I know this question might not be relevant to mrtrix3 usage; however, I had checked all of my calculations but could not find anything wrong. I wonder if there were any issues in terms of seeding fibers that lead to this situation.
So far, I used ACT method with 5tt image and seed_dynamic to reconstruct fibers.
I am truly appreciated for your help.