I was wondering if anyone could give an example of what the pe_table looks like in mrtrix format. I tried the -export_pe_table command but I get the following error: “no phase-encoding information found within image”. Similarly, the mrinfo command output doesn’t show any phase encoding information or total readout time (but that is probably a Siemens/Philips issue in the way the information is stored in the header I guess?). If we’re able to somehow retrieve this information from the raw data we can in theory create the able manually, right?
Specifically we would like to use the pe_table as input to the motion correction SHARD reconstruction software implemented in mrtrix (https://gitlab.com/ChD/shard-recon). So if anyone has had any experience with that, comments/suggestions are welcome.
Any help is much apppreciated!