Dear experts,
I am implementing a pipeline to preprocess and analyse our lab images. We recently updated our protocol to a MultShell DWI with 10b0, 24b1000, 32b2000 and 56b3000 with a separated additional B0 image (NSA=10) with inverse phase-encoded direction.
In general, my pipeline is based on:
- DWI-denoise
- Gibbs Ringing correction (AP and PA images)
- dwifslpreproc (-rpe_pair -se_epi “b0_pair.mif” -pe_dir ap -eddy_options " --slm=linear --repol" -align_seepi)
- dwibiascorrect ants
- dwi2response dhollander (-shells 0,1000,2000,3000)
- dwi2fod msmt_csd
- mtnormalise
- tckgen wmfod_Norm.mif…
Is this a good approach, or should I consider different algorithms?
Thank you very much!