I tried to use the 2 tissue CSD approach where I fed the WM and CSF response functions to
mtnormalise. However, now when I try to run the
population_template I get the error that the normalised FOD_wm
does not contain 3 spatial dimensions.
How do I get around this.
I moved your post into a new topic since it was a bit off topic in the thread it was posted to; I hope you don’t mind. You’ll have better chances of it not going unnoticed and getting an answer in this way. Can you post the output of
mrinfo on the image(s) you’re trying to feed to
population_template? @maxpietsch might be able to explain the scenario(s) that can trigger this error.
Thanks for getting back to me very quickly. I have attached a screenshot of the
mrinfo of the images that I plan to feed to
population_template. Apart from M0_07, all the other 19 images have similar info as M0_01.
What is the output of
mrinfo of the image that is printed as part of this error message?
So I figured out what was wrong. It is embarrassing to say that it was a problem with my .bashrc that was calling a different
population_template and not the required.