Hello,
I’d like to use some functionalities of MRtrix3Tissue (ss3t_csd_beta1, specifically) while keeping MRtrix3 as the default source of commands.
I have installed MRtrix3 in /usr/local/mrtrix3 and everything works fine.
I then cloned the MRtrix3Tissue repository inside the mrtrix3 directory and I proceeded as following (after having set the path for the Qt library and installed Eigen3.3.9)
cd /usr/local/mrtrix3/MRtrix3Tissue
sudo ./configure
sudo ./build
The configure and build processes were successful.
Now, back to my home folder all commands are referred to MRtrix3 and I can evoke a specific MRtrix3Tissue command specifying the full path.
As a matter of fact when I type /usr/local/mrtrix3/MRtrix3Tissue/bin/mrinfo I get the script referring to MRtrix3Tissue. When I type mrinfo I get the script referring to MRtrix3.
The problem comes with certain MRtrix3Tissue commands such as ss3t_csd_beta1 and dwifslpreproc, when I type them I get
/usr/local/mrtrix3/MRtrix3Tissue/bin/dwifslpreproc
Traceback (most recent call last):
File "/usr/local/mrtrix3/MRtrix3Tissue/bin/dwifslpreproc", line 1124, in <module>
import mrtrix3
File "/usr/local/mrtrix3/MRtrix3Tissue/bin/mrtrix3.py", line 1, in <module>
import imp, os, sys
ModuleNotFoundError: No module named 'imp'
The corresponding commands evoked from MRtrix3 work fine.
Can someone help me solving this issue?
Thank You