Hi
I’ve followed all the steps in ISMRM tutorial - Structural connectome for Human Connectome Project (HCP) — MRtrix3 3.0 documentation (with the knowledge that this is not a recommended approach).
I encountered an issue when executing the command tcksift 100M.tck WM_FODs.mif 10M_SIFT.tck -act 5TT.mif -term_number 10M
Here is the error I got
tcksift: [100%] resampling ACT 5TT image to fixel image space
tcksift: [100%] segmenting FODs
tcksift: [100%] mapping tracks to image
tcksift: [WARNING] Only 1 tracks read from input track file; expected 100000000
tcksift: [ERROR] Filtering failed; desired number of filtered streamlines is greater than or equal to the size of the input dataset
Here is the output of tckstats 100M.tck
tckstats: [100%] Reading track file
tckstats: [WARNING] read 19360 empty streamlines
tckstats: [WARNING] expected 100000000 tracks according to header; read 75419508
mean median std. dev. min max count
54.7299 40.7416 46.3425 2.5 388.264 75419508
And here is the output of tckinfo 100M.tck
Tracks file: "100M.tck"
act: 5TT.mif
backtrack: 1
command_history: tckgen WM_FODs.mif 100M.tck -act 5TT.mif -backtrack -crop_at_gmwmi -seed_dynamic WM_FODs.mif -maxlength 250 -select 100M -cutoff 0.06 (version=3.0.4)
count: 100000000
crop_at_gmwmi: 1
downsample_factor: 3
fod_power: 0.25
init_threshold: 0.0599999987
lmax: 8
max_angle: 45
max_dist: 250
max_num_seeds: 100000000000
max_num_tracks: 100000000
max_seed_attempts: 1000
max_trials: 1000
method: iFOD2
min_dist: 2.5
mrtrix_version: 3.0.4
rk4: 0
samples_per_step: 4
seed_dynamic: WM_FODs.mif
sh_precomputed: 1
source: WM_FODs.mif
step_size: 0.625
stop_on_all_include: 0
threshold: 0.06
timestamp: 1702601465.6127204895
total_count: 129101115
unidirectional: 0
ROI: seed WM_FODs.mif
Any insight is very much obliged.
Thanks