Question about 5ttgen

1

5ttgen fsl anat.mif 5tt_nocoreg.mif

cp 5tt_nocoreg.mif …/dwi/5tt_nocoreg.mif

cd …/dwi

This is the code that i am using for the 5ttgen for monkey brain. (anat.mif = T1 image)

and it got the message that it is not successful.

What kind of code should i add for monkey brain?

Thank you

2

Hi @minjik0923,

The 5ttgen algorithms implemented in MRtrix do not work for macaque brain. For those, you need to use your own tissue segmentation to generate the 5tt file.

Best regards,

Manuel