Hi.
I am working on anonimized mri images which as been skull stripped , but, in order to do source reconstruction, I’d need to reconstruct the skull. For this purpose I have some template images, which have not been betted. I am wondering if in Mrtrix3 it is possible to do the following steps:
bet the template image in order to select just the skull and remove the brain inside
register the skull-stripped image and this template skull
thanks,
Rosella
For the registration part, I would register your skull-stripped images to the original template (not just the skull) and apply the estimated transformation to the template skull. Should work…
So , you mean to register a skull-stripped brain to a non-skull stripped template with ANTs, and then use this transformation to just register the skull-stripped brain to the skull?
thank you very much